2021

• Hlozáková TK, Gálová Z, Šliková S, Leišová-Svobodová L, Beinhauer J, Dyčka F, Šebela M, Zetochová E, Gregová E (2021) Molecular characterization of novel x-type HMW glutenin subunit 1B × 6.5 in wheat. Plants 10, 2108.
  DOI: 10.3390/plants10102108
• Jakšová J, Adamec L, Petřík I, Novák O, Šebela M, Pavlovič A (2021) Contrasting effect of prey capture on jasmonate accumulation in two genera of aquatic carnivorous plants (Aldrovanda, Utricularia). Plant Physiol. Biochem. 166, 459-465.
  DOI: 10.1016/j.plaphy.2021.06.014
• Kocáb O, Bačovčinová M, Bokor B, Šebela M, Lenobel R, Schöner CB, Schöner MG, Pavlovič A (2021) Enzyme activities in two sister-species of carnivorous pitcher plants (Nepenthes) with contrasting nutrient sequestration strategies. Plant Physiol. Biochem. 161, 113-121.
  DOI: 10.1016/j.plaphy.2021.01.049
• Krupka M, Raskova Kafkova L, Barkocziova L, Sloupenska K, Brokesova D, Sebela M, Raska M (2021) Preparation and properties of recombinant Clostridium ramosum IgA proteinase. Isolation of Fc-SC and Fab fragments of human secretory IgA. Protein Express. Purif. 184, 105891.
  DOI: 10.1016/j.pep.2021.105891
• Perutka Z, Kaduchová K, Chamrád I, Beinhauer J, Lenobel R, Petrovská B, Bergougnoux V, Vrána J, Pecinka A, Doležel J, Šebela M (2021) Proteome analysis of condensed barley mitotic chromosomes, Front. Plant Sci. 12, 723674.
  DOI: 10.3389/fpls.2021.723674
• Perutka Z, Voženílek V, Šebela M (2021) Wine contaminations and frauds from the bioanalytical and biochemical points of view. In: Cifuentes, A. (Ed.), Comprehensive Foodomics, vol. 3. Elsevier, pp. 104–116. ISBN: 9780128163955.
  DOI: 10.1016/B978-0-08-100596-5.22835-7
• Šebela M, Raus M, Ondřej V, Hašler P (2021) The influence of metabolic inhibitors, antibiotics and microgravity on intact cell MALDI-TOF mass spectra of the cyanobacterium Synechococcus sp. UPOC S4. Molecules 26 (6), 1683.
  DOI: 10.3390/molecules26061683

2020

• Aquilante L, Nistor M, Taormina S, Šebela M, Frébort I, Popescu IC (2020) Determination of biogenic amines by using amperometric biosensors based on grass pea amine oxidase and oat polyamine oxidase. Stud. Univ. Babes-Bolyai Chem. LXV (3), 9-21.
  DOI: 10.24193/subbchem.2020.3.01
• Jacques F, Zhao Y, Kopečná M, Končitíková R, Kopečný D, Rippa S, Perrin Y (2020) Roles for Arabidopsis ALDH10 enzymes in γ-butyrobetaine synthesis, seed development, germination and salt tolerance. J. Exp. Bot, published on 26 August 2020.
  DOI: 10.1093/jxb/eraa394
• Jaworek P, Tarkowski P, Hluska T, Kouřil Š, Vrobel O, Nisler J, Kopečný D (2020) Characterization of five CHASE-containing histidine kinase receptors from Populus × canadensis cv. Robusta sensing isoprenoid and aromatic cytokinins. Planta, 251, 1.
  DOI: 10.1007/s00425-019-03297-x
• Kocáb O, Jakšová J, Novák O, Petřík I, Lenobel R, Chamrád I, Pavlovič A (2020) Jasmonate-independent regulation of digestive enzyme activity in the carnivorous butterwort Pinguicula x Tina. J. Exp. Bot. 71 (12), 3749-3758.
  DOI: 10.1093/jxb/eraa159
• Kouřil R, Nosek L, Opatíková M, Arshad R, Semchonok DA, Chamrád I, Lenobel R, Boekema EJ, Ilík P (2020) Unique organization of photosystem II supercomplexes and megacomplexes in Norway spruce. Plant J., in press.
  DOI: 10.1111/tpj.14918
• Magro M, Cozza G, Molinari S, Venerando A, Baratella D, Miotto G, Zennaro L, Rossetto M, Frömmel J, Kopečná M, Šebela M, Salviulo G, Vianello F (2020) Role of carboxylic group pattern on protein surface in the recognition of iron oxide nanoparticles: A key for protein corona formation. Int. J. Biol. Macromol. 164, 1715-1728.
  DOI: 10.1016/j.ijbiomac.2020.07.295
• Nisler J, Kopečný D, Pěkná Z, Končitíková R, Koprna R, Murvanidze N, Werbrouck SPO, Havlíček L, De Diego N, Kopečná M, Wimmer Z, Briozzo P, Moréra S, Zalabák D, Spíchal L, Strnad M (2020) Diphenylurea-derived cytokinin oxidase/dehydrogenase inhibitors for biotechnology and agriculture. J. Exp. Bot, Published on 18 September 2020
  DOI: 10.1093/jxb/eraa437
• Oliveira DM, Mota TR, Salatta FV, Sinzker RC, Končitíková R, Kopečný D, Simister R, Silva M, Goeminne G, Morreel K, Rencoret J, Gutiérrez A, Tryfona T, Marchiosi R, Dupree P, del Río JC, Boerjan W, McQueen-Mason SJ, Gomez LD, Ferrarese-Filho O, dos Santos WD (2020) Cell wall remodeling under salt stress: Insights into changes in polysaccharides, feruloylation, lignification, and phenolic metabolism in maize. Plant, Cell & Environment, in press
  DOI: 10.1111/pce.13805
• Perutka Z, Šebela M (2020) Mass spectrometry of peptides and proteins using digestion by a grape cysteine protease at pH 3. J. Mass Spectrom. 55 (7), e4444.
  DOI: 10.1002/jms.4444
• Šlachtová V, Šebela M, Torfs E, Oorts L, Cappoen D, Berka K, Bazgier V, Brulíková L (2020) Novel thiazolidinedione-hydroxamates as inhibitors of Mycobacterium tuberculosis virulence factor Zmp1. Eur. J. Med. Chem. 185, 111812.
  DOI: 10.1016/j.ejmech.2019.111812

2019

• Frömmel J, Končitíková D, Kopečný D, Soural M, Šebela M (2019) Oxidation of imidazole- and pyrazole-derived aldehydes by plant aldehyde dehydrogenases from the family 2 and 10. Chem. Biol. Interact. 304, 194-201.
  DOI: 10.1016/j.cbi.2019.02.008
• Hošíková B, Binder S, Lenobel R, Malohlava J, Hošík J, Jíravová J, Malina L, Zapletalová J, Kolářová H. (2019) Effect of the zinc phthalocyanine mediated photodynamic therapy on cytoskeletal apparatus of HeLa cells. Lékař a technika 49 (2), 41-45
  DOI: 10.14311/CTJ.2019.2.01
• Jaworek P, Kopečný D, Zalabák D, Šebela M, Kouřil Š, Hluska T, Končitíková R, Podlešáková K, Tarkowski P (2019) Occurrence and biosynthesis of cytokinins in poplar. Planta 250 (1), 229-244.
  DOI: 10.1007/s00425-019-03152-z
• Končitíková R, Vigouroux A, Kopečná M, Šebela M, Moréra S, Kopečný D (2019) Kinetic and structural analysis of human ALDH9A1. Biosci. Rep. 39 (4), BSR20190558.
  DOI: 10.1042/BSR20190558
• Korasick DA, Končitíková R, Kopečná M, Hájková E, Vigouroux A, Moréra S, Becker DF, Šebela M, Tanner JJ, Kopečný D (2019) Structural and biochemical characterization of aldehyde dehydrogenase 12, the last enzyme of proline catabolism in plants, J. Mol. Biol. 431 (3), 576-592.
  DOI: 10.1016/j.jmb.2018.12.010
• Machover D, Rossi L, Hamelin J, Desterke C, Goldschmidt E, Chadefaux-Vekemans B, Bonnarme P, Briozzo P, Kopecny D, Pierige F, Magnani M, Mollicone R, Haghighi-Rad F, Gaston-Mathe Y, Dairou J, Boucheix C, Saffroy R. (2019) Effects in cancer cells of the recombinant L-Methionine gamma-lyase from Brevibacterium aurantiacum. Encapsulation in human erythrocytes for sustained L-methionine elimination. J Pharmacol Exp Ther. 369 (3), 489-502.
  DOI: 10.1124/jpet.119.256537
• Magro M, Baratella D, Miotto G, Frömmel J, Šebela M, Kopečná M, Agostinelli E, Vianello F (2019) Enzyme self-assembly on naked iron oxide nanoparticles for aminoaldehyde biosensing. Amino Acids 51 (4), 679-690.
  DOI: 10.1007/s00726-019-02704-7
• Perutka Z, Šufeisl M, Strnad M, Šebela M (2019) High-proline proteins in experimental hazy white wine produced from partially botrytized grapes. Biotechnol. Appl. Biochem. 66 (3), 398-411.
  DOI: 10.1002/bab.1736

2018

• Danihlík J, Škrabišová M, Lenobel R, Šebela M, Omar E, Petřivalský M, Crailsheim K, Brodschneider R (2018) Does the pollen diet influence the production and expression of antimicrobial peptides in individual honey bees? Insects 9 (3), 79.
  DOI: 10.3390/insects9030079
• Holásková E, Galuszka P, Mičúchová A, Šebela M, Öz MT, Frébort I (2018) Molecular farming in barley: development of a novel production platform to produce human antimicrobial peptide LL-37. Biotechnol. J. 13 (6), e1700628.
  DOI: 10.1002/biot.201700628
• Chamrád I, Uřinovská J, Petrovská B, Jeřábková H, Lenobel R, Vrána J, Doležel J, Šebela M (2018) Chapter 4: Identification of plant nuclear proteins based on a combination of flow sorting, SDS-PAGE and LC-MS/MS analysis. In: Methods Mol. Biol. 1696 (Plant Membrane Proteomics: Methods and Protocols), Hans-Peter Mock et al. (eds.), Springer Science+Business Media LLC, pp. 57-79.
  DOI: 10.1007/978-1-4939-7411-5_4
• Panáček A, Kvítek L, Smékalová M, Večeřová R, Kolář M, Röderová M, Dyčka F, Šebela M, Prucek R, Tomanec O, Zbořil R. (2018) Bacterial resistance to silver nanoparticles and a way how to overcome it. Nat. Nanotechnol. 13 (1), 65-71.
  DOI: 10.1038/s41565-017-0013-y
• Perutka Z, Šebela M (2018) Chapter 2 - Basis of mass spectrometry: Technical variants. In: The Use of Mass Spectrometry Technology (MALDI-TOF) in Clinical Microbiology, Fernando Cobo (Ed.), Academic Press. ISBN 978-0-12-814451-0, pp. 19-45.
  DOI: 10.1016/B978-0-12-814451-0.00002-2
• Perutka Z, Šebela M (2018) Pseudotrypsin: a little known trypsin proteoform. Molecules 23 (10), 2637.
  DOI: 10.3390/molecules23102637
• Šebela M, Jahodářová E, Raus M, Lenobel R, Hašler P (2018) Intact cell MALDI-TOF mass spectrometric analysis of Chroococcidiopsis cyanobacteria for taxonomic purposes and identification of marker proteins. PLoS One 13 (11), e0208275.
  DOI: 10.1371/journal.pone.0208275
• Šeflová J, Čechová P, Štenclová T, Šebela M, Kubala M (2018) Identification of cisplatin-binding sites on the large cytoplasmic loop of the Na+/K+‑ATPase. J. Enz. Inhib. Med. Chem. 33 (1), 701-706.
  DOI: 10.1080/14756366.2018.1445735

2017

• Beresova L, Lenobel R (2017) Advanced approaches in study of DNA-protein interaction (Pokročilé metody studia vzájemných interakcí proteinů s DNA). Chem. Listy 111, 136-141.
  Chem. Listy 111, 136-141 [PDF]
• Blavet N, Uřinovská J, Jeřábková H, Chamrád I, Vrána J, Lenobel R, Beinhauer J, Šebela M, Doležel J, Petrovská B (2017) UNcleProt (Universal Nuclear Protein database of barley): the first nuclear protein database that distinguishes proteins from different phases of the cell cycle. Nucleus 8 (1), 70-80.
  DOI: 10.1080/19491034.2016.1255391
• Effenberg R, Turánek Knötigová P, Zyka D, Čelechovská H, Mašek J, Bartheldyová E, Hubatka F, Koudelka Š, Lukáč R, Kovalová A, Saman D, Křupka M, Barkocziová L, Kosztyu P, Šebela M, Drož L, Hučko M, Kanásová M, Miller AD, Raška M, Ledvina M, Turanek J (2017) Nonpyrogenic molecular adjuvants based on norAbu-muramyldipeptide and norAbu-glucosaminyl muramyldipeptide: synthesis, molecular mechanisms of action, biological activities in vitro and in vivo. J. Med. Chem 60 (18):7745-7763.
  DOI: 10.1021/acs.jmedchem.7b00593
• Hluska T, Šebela M, Lenobel R, Frébort I, Galuszka P (2017) Purification of maize nucleotide pyrophosphatase/phosphodiesterase casts doubt on the existence of zeatin cis-trans isomerase in plants. Front. Plant Sci. 8, 1473.
  DOI: 10.3389/fpls.2017.01473
• Kopečná M, Vigouroux A, Vilím J, Končitíková R, Briozzo P, Hájková E, Jašková L, von Schwartzenberg K, Šebela M, Moréra S, Kopečný D. (2017) The ALDH21 gene found in lower plants and some vascular plants codes for a NADP+-dependent succinic semialdehyde dehydrogenase. Plant. J. 92 (2), 229-243.
  DOI: 10.1111/tpj.13648
• Krausko M, Perutka Z, Šebela M, Šamajová O, Šamaj J, Novák O, Pavlovič A (2017) The role of electrical and jasmonate signaling in recognition of captured prey in carnivorous sundew plant Drosera capensis. New Phytol. 213 (4), 1818-1835.
  DOI: 10.1111/nph.14352
• Sebela M, Drahos L (2017) Editorial: The Central and Eastern European Proteomics Conferences: 10 Years Anniversary. J. Proteomics 153, 1
  DOI: 10.1016/j.jprot.2016.12.014
• Simerský R, Chamrád I, Kania J, Strnad M, Šebela M, Lenobel R (2017) Chemical proteomic analysis of 6-benzylaminopurine molecular partners in wheat grains. Plant Cell Rep. 36 (10), 1561-1570.
  DOI: 10.1007/s00299-017-2174-4
• Tichá T, Činčalová L, Kopečný D, Sedlářová M, Kopečná M, Luhová L, Petřivalský M (2017) Characterization of S-nitrosoglutathione reductase from Brassica and Lactuca spp. and its modulation during plant development. Nitric Oxide 68, 68-76.
  DOI: 10.1016/j.niox.2016.12.002

2016

• Beinhauer J, Lenobel R, Loginov D, Chamrád I, Řehulka P, Sedlářová M, Marchetti-Deschmann M, Allmaier G, Šebela M (2016) Identification of Bremia lactucae and Oidium neolycopersici proteins extracted for intact spore MALDI mass spectrometric biotyping. Electrophoresis 37 (22), 2940-2952.
  DOI: 10.1002/elps.201600144
• Beinhauer J, Raus M, Hanzalová A, Horčička P, Šebela M (2016) Intact spore MALDI-TOF mass spectrometry and proteomic analysis of Puccinia pathogenic fungi. Biochim. Biophys. Acta – Proteins & Proteomics, 1864 (9), 1093-1103.
  DOI: 10.1016/j.bbapap.2016.06.002
• Beresova L, Vesela E, Chamrád I, Voller J, Yamada M, Furst T, Lenobel R, Chroma K, Gursky J, Krizova K, Mistrik M, Bartek J. (2016) Role of DNA repair factor XPC in response to replication stress, revealed by DNA fragile site affinity chromatography and quantitative proteomics. J Proteome Res 15 (12), 4505-4517.
  DOI: 10.1021/acs.jproteome.6b00622
• Frömmel J, Tarkowski P, Kopečný D, Šebela M (2016) The use of tomato aminoaldehyde dehydrogenase 1 for the detection of aldehydes in fruit distillates. New Biotechnol. 33 (5), 666-675.
  DOI: 10.1016/j.nbt.2015.11.010
• Groeme R, Airouche S, Kopečný D, Jaekel J, Savko M, Berjont N, Bussieres L, Le Mignon M, Jagic F, Zieglmayer P, Baron-Bodo V, Bordas-Le Floch V, Mascarell L, Briozzo P and Moingeon P (2016) Structural and Functional Characterization of the Major Allergen Amb a 11 from Short Ragweed Pollen. J. Biol. Chem. 291, 13076-13087.
  DOI: 10.1074/jbc.M115.702001
• Hluska T, Dobrev PI, Tarkowská D, Frébortová J, Zalabák D, Kopečný D, Plíhal O, Kokáš F, Briozzo P, Zatloukal M, Motyka V, Galuszka P (2016) Cytokinin metabolism in maize: Novel evidence of cytokinin abundance, interconversions and formation of a new trans-zeatin metabolic product with a weak anticytokinin activity. Plant Sci. 247, 127–137.
  DOI: 10.1016/j.plantsci.2016.03.014
• Kopečný D, Končitíková R, Popelka H, Briozzo P, Vigouroux A, Kopečná M, Zalabák D, Šebela M, Skopalová J, Frébort I, Moréra S (2016) Kinetic and structural investigation of the cytokinin oxidase/dehydrogenase active site. FEBS J. 283 (2), 361-377.
  DOI: 10.1111/febs.13581
• Krupka M, Masek J, Barkocziova L, Turanek Knotigova P, Kulich P, Plockova J, Lukac R, Bartheldyova E, Koudelka S, Chaloupkova R, Sebela M, Zyka D, Droz L, Effenberg R, Ledvina M, Miller AD, Turanek J, Raska M (2016) The position of His-tag in recombinant OspC and application of various adjuvants affects the intensity and quality of specific antibody response after immunization of experimental mice. PLOS One 11 (2), e0148497.
  DOI: 10.1371/journal.pone.0148497
• Loginov D, Šebela M (2016) Proteomics of survival structures of fungal pathogens. New Biotechnol. 33 (5), 655-665.
  DOI: 10.1016/j.nbt.2015.12.011
• Nisler J., Kopečný D., Končitíková R., Zatloukal M., Bazgier V., Berka K., Zalabák D., Briozzo P., Strnad M., Spíchal L. (2016) Novel thidiazuron-derived inhibitors of cytokinin oxidase/dehydrogenase. Plant Mol. Biol. 92 (1-2), 235-48.
  DOI: 10.1007/s11103-016-0509-0
• Petrovská B, Šebela M, Doležel J (2016) Discovering the world of plant nuclear proteins. In: Molecular Cell Biology of the Growth and Differentiation of Plant Cells (RJ Rose, Ed.), pp. 22-36, CRC Press (Taylor and Francis Group), Boca Raton, FL. ISBN 9781498726023.
  DOI: 10.1201/b20316-4
• Šebela M (2016) Solid mixed matrices and their advantages in matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry. Spectroscopy Europe 28 (1), 10-14.
  http://www.spectroscopyeurope.com/images/stories/ArticlePDfs/MS%2028-1.pdf [PDF]
• Šebela M (2016) Analysis and sequencing of nucleic acids by matrix-assisted laser desorption/ionisation mass spectrometry. Spectroscopy Europe 28 (5), 11-15.
  http://www.spectroscopyeurope.com/images/stories/ArticlePDfs/MS2-28_5.pdf [PDF]

2015

• Beinhauer J, Bian L, Fan H, Šebela M, Kukula M, Barrera JA, Schug KA (2015) Bulk derivatization and cation exchange restricted access media-based trap-and-elute liquid chromatography-mass spectrometry method for determination of trace estrogens in serum. Anal. Chim. Acta 858, 74-81.
  DOI: 10.1016/j.aca.2014.11.032
• Branná P, Rouchal M, Prucková Z, Dastychová L, Lenobel R, Pospíšil T, Maláč K, Vícha R (2015) Rotaxanes capped with host molecules: supramolecular behavior of adamantylated bisimidazolium salts containing a biphenyl centerpiece. Chem. Eur. J. 21 (33), 11712–11718.
  DOI: 10.1002/chem.201501353
• Dyčka F, Franc V, Fryčák P, Raus M, Řehulka P, Lenobel R, Allmaier G, Marchetti-Deschmann M, Šebela M (2015) Evaluation of pseudotrypsin cleavage specificity towards proteins by MALDI-TOF mass spectrometry. Protein Pept. Lett. 22 (12), 1123-1132.
  DOI: 10.2174/0929866522666151008151617
• Frömmel J, Šebela M, Demo G, Lenobel R, Pospíšil T, Soural M, Kopečný D (2015) N-acyl-omega-aminoaldehydes are efficient substrates of plant aminoaldehyde dehydrogenases. Amino Acids 47 (1), 175-187.
  DOI: 10.1007/s00726-014-1853-5
• Helmel M, Marchetti-Deschmann M, Raus M, Posch AE, Herwig C, Šebela M, Allmaier G (2015) Intact cell mass spectrometry as a progress tracking tool for batch and fed-batch fermentation processes. Anal. Biochem. 470, 25-33.
  DOI: 10.1016/j.ab.2014.10.008
• Končitíková R, Vigouroux A, Kopečná M, Andree T, Bartoš J, Šebela M, Moréra S, Kopečný D (2015) Role and structural characterization of plant aldehyde dehydrogenases from family 2 and family 7. Biochem. J. 468 (1), 109-123.
  DOI: 10.1042/BJ20150009
• Krupka M, Zachova K, Cahlikova R, Vrbkova J, Novak Z, Sebela M, Weigl E, Raska M (2015) Endotoxin-minimized HIV-1 p24 fused to murine hsp70 activates dendritic cells, facilitates endocytosis and p24-specific Th1 response in mice. Immunol. Lett., 166 (1), 36-44
  DOI: 10.1016/j.imlet.2015.05.010
• Lenobel R, Řehulková H, Šebela M, Franc V, Kahle V, Moravcová D, Řehulka P (2015) Analysis of peptide mixtures for proteomics research using LC-ESI-MS with a simple microgradient device. LC GC N. Am. 33 (6), 420-+.
  http://www.chromatographyonline.com/analysis-peptide-mixtures-proteomics-research-using-lc-esi-ms-simple-microgradient-device
• Maixnerová L, Horvitz A, Kuncová G, Přibyl M, Šebela M, Koštejn M (2015) Enzymatic sensor of putrescine with optical oxygen transducer – mathematical model of responses of sensitive layer. Chem. Pap. 69 (1), 158-166.
  DOI: 10.1515/chempap-2015-0041
• Mojzych M, Sebela M (2015) Synthesis and biological activity evaluation of Schiff bases of 5-acyl-1,2,4-triazine. J. Chem. Soc. Pak. 37 (2), 300-305.
  J.Chem.Soc. Pak. 37 (2), 300-305 [PDF]
• Petrovská B, Šebela M, Doležel J (2015) Inside a plant nucleus: discovering the proteins. J. Exp. Bot. 66 (6), 1627-1640.
  DOI: 10.1093/jxb/erv041

2014

• Ćavar S, Šolić M E, Maksimović M (2014) Chemical Composition and Antioxidant Activity of Two Satureja Species from Mt. Biokovo. Botanica Serbica, 38 (1), 159-165.
• Chalupová J, Raus M, Sedlářová M, Šebela M (2014) Identification of fungal microorganisms by MALDI-TOF mass spectrometry. Biotechnol. Adv. 32 (1), 230-241.
  DOI: 10.1016/j.biotechadv.2013.11.002
• Danihlík J, Šebela M, Petřivalský M, Lenobel R (2014) A sensitive quantification of the peptide apidaecin 1 isoforms in single bee tissues using a weak cation exchange pre-separation and nanocapillary liquid chromatography coupled with mass spectrometry. J. Chromatogr. A 1374, 134-144.
  DOI: 10.1016/j.chroma.2014.11.041
• Hatipi M, Papajani V, Ćavar S, Koliqi R (2014) Analysis of Volatile Compounds of Origanum vulgare L. Growing Wild in Kosovo. J. Essent. Oil Bear. Pl. 17 (1), 148-157.
  DOI: 10.1080/0972060X.2014.884772
• Chamrád I, Simerský R, Bérešová L, Strnad M, Šebela M, Lenobel R (2014) Proteomic identification of a candidate sequence of wheat cytokinin-binding protein 1. J. Plant Growth Regul. 33 (4), 896-902.
  DOI: 10.1007/s00344-014-9419-z
• Kasperova A, Cahlikova R, Kunert J, Sebela M, Novak Z, Raska M (2014) Exposition of dermatophyte Trichophyton mentagrophytes to L-cystine induces expression and activation of cysteine dioxygenase. Mycoses 57 (11), 672–678.
  DOI: 10.1111/myc.12220
• Kouřil R, Strouhal O, Nosek L, Lenobel R, Chamrád I, Boekema EJ, Šebela M, Ilík P (2014). Structural characterization of a plant photosystem I and NAD(P)H dehydrogenase supercomplex. Plant J. 77 (4), 568-576.
  DOI: 10.1111/tpj.12402
• Kubala M, Geletičová J, Huličiak M, Zatloukalová M, Vacek J, Šebela M (2014) Na⁺/K⁺-ATPase inhibition by cisplatin and consequences for cisplatin nephrotoxicity. Biomed. Pap-Olomouc 158 (2), 194-200.
  DOI: 10.5507/bp.2014.018
• Mortier V, Wasson A, Jaworek P, De Keyser A, Decroos M, Holsters M, Tarkowski P, Mathesius U, Goormachtig S (2014) Role of LONELY GUY genes in indeterminate nodulation on Medicago truncatula. New Phytol. 202 (2), 582-593.
  DOI: 10.1111/nph.12681
• Petrovská B, Jeřábková H, Chamrád I, Vrána J, Lenobel R, Uřinovská J, Šebela M, Doležel J (2014) Proteomic analysis of barley cell nuclei purified by flow sorting. Cytogenet. Genome Res. 143 (1-3), 78-86.
  DOI: 10.1159/000365311
• Rohozková J, Šebela M and Navrátil M (2014) P1 peptidase of pea seed-borne mosaic virus contains non-canonical C2H2 zinc finger and may act in a truncated form. J. Plant Sci. Mol. Breed.3:1.
  DOI: 10.7243/2050-2389-3-1
• Tarkowská D, Novák O, Floková K, Tarkowski P, Turečková V, Grúz J, Rolčík J, Strnad M (2014) Quo vadis plant hormone analysis? Planta, 240 (1), 55-76.
  DOI: 10.1007/s00425-014-2063-9
• Tarkowski P, Vereecke D (2014) Threats and opportunities of plant pathogenic bacteria. Biotechnol. Adv 32 (1), 215-229.
  DOI: 10.1016/j.biotechadv.2013.11.001
• Toska Papajani V, Hatipi M, Ćavar S, Haloci E (2014) GC/MS Analysis of the Essential Oil of Thymus tosevii Vel. from Kosovo. International Journal of Pharmacognosy and Phytochemistry, 29 (2), 1276-1282.
  http://www.academia.edu/8380064/GC_MS_Analysis_of_the_Essential_Oil_of_Thymus_tosevii_Vel._from_Kosovo

2013

• Brocker C, Vasiliou M, Carpenter S, Carpenter C, Zhang Y, Wang X, Kotchoni SO, Wood AJ, Kirch HH, Kopečný D, Nebert DW, Vasiliou V (2013) Aldehyde dehydrogenase (ALDH) superfamily in plants: gene nomenclature and comparative genomics. Planta 237, 189-210.
  DOI: 10.1007/s00425-012-1749-0
• Chamrád I, Rix U, Stukalov A, Gridling M, Parapatics K, Müller AC, Altiok S, Colinge J, Superti-Furga G, Haura EB, Bennett KL (2013) A miniturized chemical proteomic approach for target profiling of clinical kinase inhibitors in tumor biopsies. J Proteome Res. 12, 4005-4017.
  DOI: 10.1021/pr400309p
• Franc V, Řehulka P, Medda R, Padiglia A, Floris G, Šebela M (2013) Analysis of the glycosylation pattern of plant copper amine oxidases by MALDI-TOF/TOF mass spectrometry coupled to a manual chromatographic separation of glycans and glycopeptides. Electrophoresis 34, 2357–2367.
  DOI: 10.1002/elps.201200622
• Franc V, Řehulka P, Raus M, Stulík J, Novák J, Renfrow MB, Šebela M (2013) Elucidating heterogeneity of IgA1 hinge-region O-glycosylation by use of MALDI-TOF/TOF mass spectrometry: Role of cysteine alkylation during sample processing. J.Proteomics, 299–312.
  DOI: 10.1016/j.jprot.2013.07.013
• Grune T, Šebela M (2013) Special issue on “protein modification”. J Proteomics, 92, 1.
  DOI: 10.1016/j.jprot.2013.08.014
• Kopečná M, Blaschke H, Kopečný D, Vigouroux A, Končitíková R, Novák O, Kotland O, Strnad M, Moréra S, von Schwartzenberg K (2013) Structure and function of nucleoside hydrolases from Physcomitrella and maize catalyzing hydrolysis of purine, pyrimidine and cytokinin ribosides. Plant Physiol. 163, 1568-1583.
  DOI: 10.1104/pp.113.228775
• Kopečný D, Končitíková R, Tylichová M, Vigouroux A, Moskalíková H, Soural M, Šebela M, Moréra S (2013) Plant ALDH10 family: Identifying critical residues for substrate specificity and trapping a thiohemiacetal intermediate. J. Biol. Chem. 95, 889-902.
  DOI: 10.1074/jbc.M112.443952
• Kubienová L, Kopečný D, Tylichová M, Briozzo P, Skopalová J, Šebela M, Navrátil M, Tâche R, Luhová L, Barroso JB, Petřivalský M (2013) Structural and functional characterization of a plant S-nitrosoglutathione reductase fromm Solanum lycopersicumm. Biochimie 95, 889–902.
  DOI: 10.1016/j.biochi.2012.12.009
• Motte H, Galuszka P, Spíchal L, Tarkowski P, Plíhal O, Šmehilová M, Jaworek P, Vereecke D, Werbrouck S, Geelen D (2013) Phenyl-Adenine, Identified in a LIGHT-DEPENDENT SHORT HYPOCOTYLS4-Assisted Chemical Screen, Is a Potent Compound for Shoot Regeneration through the Inhibition of CYTOKININ OXIDASE/DEHYDROGENASE Activity. Plant Physiol. 161, 1229-1241.
  DOI: 10.1104/pp.112.210716
• Pečová M, Šebela M , Marková Z, Poláková K, Čuda J, Šafářová K, Zbořil R (2013) Thermostable trypsin conjugates immobilized to biogenic magnetite show a high operational stability and remarkable reusability for protein digestion. Nanotechnology 24, 125102.
  DOI: 10.1088/0957-4484/24/12/125102
• Pospíšková K, Šafařík I, Šebela M, Kuncová G (2013) Magnetic particles based biosensor for biogenic amines using an optical oxygen sensor as a transducer. Microchim. Acta 180, 311-318.
  DOI: 10.1007/s00604-012-0932-0
• Raus M, Šebela M (2013) BIOSPEAN: A freeware tool for processing spectra from MALDI intact cell/spore mass spectrometry. J. Proteomics Bioinform. 6 (12), 283-287.
  DOI: 10.4172/jpb.1000292
• Raus M, Kopečný D, Šebela M (2013) Program application for the prediction of results of protein digestion by proteolytic enzymes. Chemické listy 107, 44-53.
  Chemické listy 107, 44-53 [PDF]

2012

• Bielach A, Podlešáková K, Marhavy P, Duclercq J, Cuesta C, Müller B, Grunewald W, Tarkowski P, Benková E (2012) Spatiotemporal regulation of lateralroot organogenesis in Arabidopsis by cytokinin. Plant Cell 24, 3967-3981.
  DOI: 10.1105/tpc.112.103044
• Béres T, Gemrotová M, Tarkowski P, Ganzera M, Maier V, Friedecký D, Dessoy MA, Wessjohann LA, Spíchal L, Strnad M, Doležal K(2012) Analysis of cytokinin nucleotides by capillary zone electrophoresis with diode array and mass spectrometric detection in a recombinant enzymee in vitrooreaction. Anal. Chim. Acta 751, 176–181.
  DOI: 10.1016/j.aca.2012.08.049
• Chalupová J, Sedlářová M, Helmel M, Řehulka P, Marchetti-Deschmann M, Allmaier G, Šebela M (2012) MALDI-based intact spore mass spectrometry of downy and powdery mildews. J. Mass Spectrom. 47, 978–986.
  DOI: 10.1002/jms.3046
• Franc V, Šebela M, Řehulka P, Končitíková R, Lenobel R, Madzak C, Kopečný D (2012) Analysis off N-glycosylation in maize cytokinin oxidase/dehydrogenase 1 using a manual microgradient chromatographic separation coupled offline to MALDI-TOF/TOF mass spectrometry. J. Proteomics 75, 4027–4037.
  DOI: 10.1016/j.jprot.2012.05.013
• Frömmel J, Soural M, Tylichová M, Kopečný D, Demo G, Wimmerová M, Šebela M (2012) Plant aminoaldehyde dehydrogenases oxidize a wide range of nitrogenous heterocyclic aldehydes. Amino Acids, 505-516.
  DOI: 10.1007/s00726-011-1174-x

2011

• Chamrád I, Strouhal O, Řehulka P, Lenobel R, Šebela M (2011) Microscale affinity purification of trypsin reduces background peptides in matrix-assisted laser desorption/ionization mass spectrometry of protein digests. J. Proteomics 74, 948-957.
  DOI: 10.1016/j.jprot.2011.02.011
• Kopečný D, Tylichová M, Snégaroff J, Popelková H, Šebela M (2011) Carboxylate and aromatic active-site residues are determinants of high affinity binding of ω-aminoaldehydes to plant aminoaldehyde dehydrogenases. FEBS J. 278, 3130-3139.
  DOI: 10.1111/j.1742-4658.2011.08239.x

2010

• Tarkowski P, Floková K, Václavíková K, Jaworek P, Raus M, Nordstrom A, Novák O, Doležal K, Šebela M, Frébortová J (2010) An improvedd in vivo deuterium labeling method for measuring the biosynthetic rate of cytokinins. Molecules 15, 9214-9229.
  DOI: 10.3390/molecules15129214